Простое начало. Как четыре закона физики формируют живой мир - Партасарати Рагувир

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4 Haswell E. S. et al. Mechanosensitive channels: What can they do and how do they do it? Structure. 2011; 19: 1356–1369; Peyronnet R. et al. Mechanosensitive channels: Feeling tension in a world under pressure. Front. Plant Sci. 2014; 5: 558.

5 Aragona M. et al. Mechanisms of stretch-mediated skin expansion at single-cell resolution. Nature. 2020; 584: 268–273.

6 Yamamoto K. et al. Fluid shear stress induces differentiation of Flk-1-positive embryonic stem cells into vascular endothelial cells in vitro. American Journal of Physiology-Heart and Circulatory Physiology. 2005; 288: H1915 – H1924 (2005); Wang H. et al. Shear stress induces endothelial differentiation from a murine embryonic mesenchymal progenitor cell line. Arteriosclerosis, Thrombosis, and Vascular Biology. 2005; 25: 1817–1823.

7 Landecker H. Culturing Life: How Cells Became Technologies. Cambridge, MA: Harvard University Press, 2010; Steinberg M. S., Takeichi M. Experimental specification of cell sorting, tissue spreading, and specific spatial patterning by quantitative differences in cadherin expression. Proc. Natl. Acad. Sci. 1994; 91: 206–209.

8 Simian M., Bissell M. J. Organoids: A historical perspective of thinking in three dimensions. J. Cell Biol. 2017; 216: 31–40.

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11 Eiraku M. et al. Self-organized formation of polarized cortical tissues from ESCs and its active manipulation by extrinsic signals. Cell Stem Cell. 2008; 3: 519–532.

12 Lancaster M. A. et al. Cerebral organoids model human brain development and microcephaly. Nature. 2013; 501: 373–379.

13 Cepelewicz J. An ethical future for brain organoids takes shape. Quanta Magazine. 2020; January 13 (https://www.quantamagazine.org/an-ethical-future-for-brain-organoids-takes-shape-20200123/).

14 Huh D. et al. Reconstituting organ-level lung functions on a chip. Science. 2010; 328: 1662–1668.

15 McAleer C. W. et al. Multi-organ system for the evaluation of efficacy and off-target toxicity of anticancer therapeutics. Science Translational Medicine. 2019; 11: eaav1386; Edington C. D. et al. Interconnected microphysiological systems for quantitative biology and pharmacology studies. Sci. Rep. 2018; 8: 1–18.

Глава 9. Экосистема внутри вас

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6 Zmora N. et al. Personalized gut mucosal colonization resistance to empiric probiotics is associated with unique host and microbiome features. Cell. 2018; 174: 1388–1405.e21.

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11 О заболеваемости холерой и ее лечении см. статьи на сайтах ВОЗ (https://www.who.int/news-room/fact-sheets/detail/cholera) и Центров по контролю и профилактике заболеваний США (https://www.cdc.gov/cholera/treatment/index.html).

12 Russell B. et al. Type VI secretion system effectors: Poisons with a purpose. Nat. Rev. Micro. 2014; 12: 137–148.

13 Об экспериментах с холерным вибрионом и его T6SS в моей лаборатории: Logan S. L. et al. The Vibrio cholerae type VI secretion system can modulate host intestinal mechanics to displace gut bacterial symbionts. Proc. Natl. Acad. Sci. 2018; 115: E3779 – E3787.

14 Wiles T. J. et al. Swimming motility of a gut bacterial symbiont promotes resistance to intestinal expulsion and enhances inflammation. PLOS Biology. 2020; 18: e3000661.

15 Kotula J. W. et al. Programmable bacteria detect and record an environmental signal in the mammalian gut. Proc. Natl. Acad. Sci. 2014; 111: 4838–4843.

16 Cremer J. et al. Effect of flow and peristaltic mixing on bacterial growth in a gut-like channel. Proc. Natl. Acad. Sci. 2016; 113: 11414–11419.

17 Shin W. et al. Human intestinal morphogenesis Controlled by Transepithelial Morphogen Gradient and Flow-Dependent Physical Cues in a microengineered gut-on-a-chip. iScience. 2019; 15: 391–406.

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20 Cui W. et al. Diverse communities behave like typical random ecosystems. bioRxiv. 2019 (https://doi.org/10.1101/596551); Marsland III R. et al. Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities. PLOS Computational Biology. 2019; 15: e1006793.