Михаил Никитин - Происхождение жизни. От туманности до клетки
Fairén, A. G., Fernández-Remolar, D., Dohm, J. M., Baker, V. R. & Amils, R. Inhibition of carbonate synthesis in acidic oceans on early Mars // Nature, 2004, vol. 431, pp. 423–426. DOI: 10.1038/nature02911
Figueroa, R. I., Bravo, I., Fraga, S., Garcés, E. & Llaveria, G. The Life History and Cell Cycle of Kryptoperidinium foliaceum, A Dinoflagellate with Two Eukaryotic Nuclei // Protist, 2009, vol. 160, pp. 285–300. DOI: 10.1016/j.protis.2008.12.003
Fisher, M. A., McKinley, K. L., Bradley, L. H., Viola, S. R. & Hecht, M. H. De Novo Designed Proteins from a Library of Artificial Sequences Function in Escherichia Coli and Enable Cell Growth // PLoS ONE, 2011, vol. 6. DOI: 10.1371/journal.pone.0015364
Fitz, D., Jakschitz, T. & Rode, B. M. in Origins of Life: The Primal Self-Organization (eds. Egel, R., Lankenau, D.-H. & Mulkidjanian, A. Y.), pp. 109–127 (Springer Berlin Heidelberg, 2011).
Forterre, P. & Prangishvili, D. The origin of viruses // Research in Microbiology, 2009, vol. 160, pp. 466–472. DOI: 16/j.resmic.2009.07.008
Forterre, P. A new fusion hypothesis for the origin of Eukarya: better than previous ones, but probably also wrong // Research in microbiology, 2011, vol. 162, pp. 77–91. DOI: 10.1016/j.resmic.2010.10.005
Forterre, P. The origin of DNA genomes and DNA replication proteins // Current Opinion in Microbiology, 2002, vol. 5, pp. 525–532. DOI: 10.1016/S1369–5274(02)00360–0
Forterre, P. The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells // Biochimie, 2005, vol. 87, pp. 793–803. DOI: 10.1016/j. biochi.2005.03.015
Forterre, P. Three RNA cells for ribosomal lineages and three DNA viruses to replicate their genomes: A hypothesis for the origin of cellular domain // Proceedings of the National Academy of Sciences of the United States of America, 2006, vol. 103, pp. 3669–3674. DOI: 10.1073/pnas.0510333103
Fuerst, J. A. & Sagulenko, E. Keys to eukaryality: planctomycetes and ancestral evolution of cellular complexity // Frontiers in microbiology, 2012, vol. 3, pp. 167. DOI: 10.3389/fmicb.2012.00167
Giulio, M. D. A Comparison Among the Models Proposed to Explain the Origin of the tRNA Molecule: A Synthesis // Journal of Molecular Evolution, 2009, vol. 69, pp. 1–9. DOI: 10.1007/s00239-009-9248-z
Gomes, R., Levison, H. F., Tsiganis, K. & Morbidelli, A. Origin of the cataclysmic Late Heavy Bombardment period of the terrestrial planets // Nature, 2005, vol. 435, pp. 466–469. DOI: 10.1038/nature03676
Grein, F., Ramos, A. R., Venceslau, S. S. & Pereira, I. A. C. Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism // Biochimica et Biophysica Acta (BBA) – Bioenergetics, 2013, vol. 1827, pp. 145–160. DOI: 10.1016/j.bbabio.2012.09.001
Gribaldo, S., Talla, E. & Brochier-Armanet, C. Evolution of the haem copper oxidases superfamily: a rooting tale // Trends in Biochemical Sciences, 2009, vol. 34, pp. 375–381. DOI: 10.1016/j.tibs.2009.04.002
Gupta, R. S. Origin and Spread of Photosynthesis Based upon Conserved Sequence Features in Key Bacteriochlorophyll Biosynthesis Proteins // Molecular Biology and Evolution, 2012, vol. 29, pp. 3397–3412. DOI: 10.1093/molbev/mss145
Guzman, M. I. & Martin, S. T. Prebiotic metabolism: production by mineral photoelectrochemistry of alpha-ketocarboxylic acids in the reductive tricarboxylic acid cycle // Astrobiology, 2009, vol. 9, pp. 833–842. DOI: 10.1089/ast.2009.0356
Hagan, W. J. Uracil-Catalyzed Synthesis of Acetyl Phosphate: A Photochemical Driver for Protometabolism // ChemBioChem, 2010, vol. 11, pp. 383–387. DOI: 10.1002/cbic. 200900433
Haines, T. H. Do sterols reduce proton and sodium leaks through lipid bilayers? // Progress in lipid research, 2001, vol. 40, pp. 299–324. DOI: 10.1016/S0163–7827(01)00009–1
Halliday, A. N. The Origin and Earliest History of the Earth // Planets, Asteriods, Comets and The Solar System, 2014, vol. 1, pp. 149–211.
Halliday, A. N. The origins of volatiles in the terrestrial planets // Geochimica et Cosmochimica Acta, 2013, vol. 105, pp. 146–171. DOI: 10.1016/j.gca.2012.11.015
Harish, A. & Caetano-Anollés, G. Ribosomal History Reveals Origins of Modern Protein Synthesis // PLoS ONE, 2012, vol. 7, p. e32776. DOI: 10.1371/journal.pone.0032776
Hartman, H. & Smith, T. F. The Evolution of the Ribosome and the Genetic Code // Life, 2014, vol. 4, pp. 227–249. DOI: 10.3390/life4020227
Hazen, R. M., Filley, T. R. & Goodfriend, G. A. Selective adsorption of l– and d-amino acids on calcite: Implications for biochemical homochirality // Proceedings of the National Academy of Sciences, 2001, vol. 98, pp. 5487–5490. DOI: 10.1073/pnas.101085998
Hein, J. E. & Blackmond, D. G. On the Origin of Single Chirality of Amino Acids and Sugars in Biogenesis // Accounts of chemical research, 2012. DOI: 10.1021/ar200316n
Hohmann-Marriott, M. F. & Blankenship, R. E. Evolution of photosynthesis // Annual Review of Plant Biology, 2011, vol. 62, pp. 515–548. DOI: 10.1146/annurev-arplant-042110–103811
Hohn, T., Hohn, B. & Pfeiffer, P. Reverse transcription in CaMV // Trends in Biochemical Sciences, 1985, vol. 10, pp. 205–209. DOI: 10.1016/0968–0004(85)90193–8
Hsiao, C. et al. Molecular paleontology: a biochemical model of the ancestral ribosome // Nucleic Acids Research, 2013 gkt023. DOI: 10.1093/nar/gkt023
Hsiao, C., Mohan, S., Kalahar, B. K. & Williams, L. D. Peeling the Onion: Ribosomes Are Ancient Molecular Fossils // Molecular Biology and Evolution, 2009, vol. 26, pp. 2415–2425. DOI: 10.1093/molbev/msp163
Huang, W. & Ferris, J. P. One-step, regioselective synthesis of up to 50-mers of RNA oligomers by montmorillonite catalysis // Journal of the American Chemical Society, 2006, vol. 128, pp. 8914–8919. DOI: 10.1021/ja061782k
Ii, H. J. C. & Bada, J. L. in Genesis – In The Beginning (ed. Seckbach, J.), pp. 3–33 (Springer Netherlands, 2012).
Inagaki, F. et al. Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system // Proceedings of the National Academy of Sciences, 2006, vol. 103, pp. 14164–14169. DOI: 10.1073/pnas.0606083103
Ingar, A.-A., Luke, R. W. A., Hayter, B. R. & Sutherland, J. D. Synthesis of Cytidine Ribonucleotides by Stepwise Assembly of the Heterocycle on a Sugar Phosphate // ChemBioChem, 2003, vol. 4, pp. 504–507. DOI: 10.1002/cbic. 200300554
Iyer, L. M., Koonin, E. V. & Aravind, L. Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases // BMC Structural Biology, 2003, vol. 3, p. 1. DOI: 10.1186/1472-6807-3-1
Jadhav, V. R. & Yarus, M. Acyl-CoAs from Coenzyme Ribozymes // Biochemistry, 2002, vol. 41, pp. 723–729. DOI: 10.1021/bi011803h
Jadhav, V. R. & Yarus, M. Coenzymes as coribozymes // Biochimie, 2002, vol. 84, pp. 877–888. DOI: 10.1016/S0300–9084(02)01404–9
Jheeta, S. & Joshi, P. C. Prebiotic RNA Synthesis by Montmorillonite Catalysis // Life: Open Access Journal, 2014, vol. 4, pp. 318–330. DOI: 10.3390/life4030318
Kaula, W. M. Constraints on Venus Evolution from Radiogenic Argon // Icarus, 1999, vol. 139, pp. 32–39. DOI: 10.1006/icar. 1999.6082
Keeling, P. J. Diversity and evolutionary history of plastids and their hosts // American Journal of Botany, 2004, vol. 91, pp. 1481–1493. DOI: 10.3732/ajb.91.10.1481
Keller, M. A., Turchyn, A. V. & Ralser, M. Non-enzymatic glycolysis and pentose phosphate pathway-like reactions in a plausible Archean ocean // Molecular Systems Biology, 2014, vol. 10. DOI: 10.1002/msb.20145228
Kim, H.-J. et al. Synthesis of Carbohydrates in Mineral-Guided Prebiotic Cycles // Journal of the American Chemical Society, 2011, vol. 133, pp. 9457–9468. DOI: 10.1021/ja201769f
Koch, A. L. & Silver, S. in Advances in Microbial Physiology (ed. Robert K. Poole), vol. 50, pp. 227–259 (Academic Press, 2005).
Kofoed, J., Reymond, J.-L. & Darbre, T. Prebiotic carbohydrate synthesis: zinc-proline catalyzes direct aqueous aldol reactions of alpha-hydroxy aldehydes and ketones // Organic & biomolecular chemistry, 2005, vol. 3, pp. 1850–1855. DOI: 10.1039/b501512j
Koonin, E. V. & Novozhilov, A. S. Origin and evolution of the genetic code: the universal enigma // IUBMB Life, 2009, vol. 61, pp. 99–111. DOI: 10.1002/iub.146
Koonin, E. V. On the Origin of Cells and Viruses // Annals of the New York Academy of Sciences, 2009, vol. 1178, pp. 47–64. DOI: 10.1111/j.1749–6632.2009.04992.x
Koonin, E. V. Temporal order of evolution of DNA replication systems inferred by comparison of cellular and viral DNA polymerases // Biology Direct, 2006, Vol. 1, pp. 39. DOI: 10.1186/1745-6150-1-39
Kreysing, M., Keil, L., Lanzmich, S. & Braun, D. Heat flux across an open pore enables the continuous replication and selection of oligonucleotides towards increasing length // Nature Chemistry, 2015, vol. 7, pp. 203–208. DOI: 10.1038/nchem.2155
Kritsky, M. S., Kolesnikov, M. P. & Telegina, T. A. Modeling of abiogenic synthesis of ATP // Doklady Biochemistry and Biophysics, 2007, vol. 417, pp. 313–315. DOI: 10.1134/S1607672907060063
Lamb, D. C. et al. Lanosterol Biosynthesis in the Prokaryote Methylococcus Capsulatus: Insight into the Evolution of Sterol Biosynthesis // Molecular Biology and Evolution, 2007, vol. 24, pp. 1714–1721. DOI: 10.1093/molbev/msm090
Laskar, J. & Robutel, P. The chaotic obliquity of the planets // Nature, 1993, vol. 361, pp. 608–612. DOI: 10.1038/361608a0
Leipe, D. D., Aravind, L. & Koonin, E. V. Did DNA replication evolve twice independently? // Nucleic Acids Research, 1999, vol. 27, pp. 3389–3401. DOI: 10.1093/nar/27.17.3389.
Lincoln, T. A. & Joyce, G. F. Self-sustained Replication of an RNA Enzyme // Science (New York, N. Y.), 2009, vol. 323, pp. 1229–1232. DOI: 10.1126/science.1167856
Lissauer, J. J. et al. A closely packed system of low-mass, low-density planets transiting Kepler-11 // Nature, 2011, vol. 470, pp. 53–58 (2011). DOI: 10.1038/nature09760
Liu, R. & Orgel, L. E. Enzymatic synthesis of polymers containing nicotinamide mononucleotide // Nucleic Acids Research, 1995, vol. 23, pp, 3742–3749. DOI: 10.1093/nar/23.18.3742
Lombard, J., López-García, P. & Moreira, D. The early evolution of lipid membranes and the three domains of life // Nature Reviews Microbiology, 2012, vol. 10, pp. 507–515. DOI: 10.1038/nrmicro2815
Macnaughton, T. B., Shi, S. T., Modahl, L. E. & Lai, M. M. C. Rolling Circle Replication of Hepatitis Delta Virus RNA Is Carried Out by Two Different Cellular RNA Polymerases // Journal of Virology, 2002, vol. 76, pp. 3920–3927. DOI: 10.1128/JVI.76.8.3920–3927.2002
Makarova, K. S., Yutin, N., Bell, S. D. & Koonin, E. V. Evolution of diverse cell division and vesicle formation systems in Archaea // Nature reviews. Microbiology, 2010, vol. 8, pp. 731–741. DOI: 10.1038/nrmicro2406
Malyshev, D. A. et al. A semi-synthetic organism with an expanded genetic alphabet // Nature, 2014, advance online publication. DOI: 10.1038/nature13314
Margulis, L., Chapman, M., Guerrero, R. & Hall, J. The last eukaryotic common ancestor (LECA): Acquisition of cytoskeletal motility from aerotolerant spirochetes in the Proterozoic Eon // Proceedings of the National Academy of Sciences, 2006, vol. 103, pp. 13080–13085. DOI: 10.1073/pnas.0604985103
Marreiros, B. C., Batista, A. P., Duarte, A. M. S. & Pereira, M. M. A missing link between complex I and group 4 membrane-bound [NiFe] hydrogenases // Biochimica et Biophysica Acta (BBA) – Bioenergetics, 2013, vol. 1827, pp. 198–209. DOI: 10.1016/j.bbabio.2012.09.012
Martin, H. et al. 4. Building of a Habitable Planet // Earth, Moon, and Planets, 2006, vol. 98, pp. 97–151. DOI: 10.1007/s11038-006-9088-4
Martin, L. L., Unrau, P. J. & Müller, U. F. RNA Synthesis by in Vitro Selected Ribozymes for Recreating an RNA World // Life, 2015, vol. 5, pp. 247–268. DOI: 10.3390/life5010247
Martin, W. & Russell, M. J. On the origin of biochemistry at an alkaline hydrothermal vent // Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2007, vol. 362, pp. 1887–1925. DOI: 10.1098/rstb.2006.1881
Marty, B. The origins and concentrations of water, carbon, nitrogen and noble gases on Earth // Earth and Planetary Science Letters, 2012, vol. 313–314, pp. 56–66. DOI: 10.1016/j.epsl.2011.10.040
Mast, C. B., Schink, S., Gerland, U. & Braun, D. Escalation of polymerization in a thermal gradient // Proceedings of the National Academy of Sciences, 2013, vol. 110, pp. 8030–8035. DOI: 10.1073/pnas.1303222110
Mellersh, A. R. A model for the prebiotic synthesis of peptides which throws light on the origin of the genetic code and the observed chirality of life // Origins of life and evolution of the biosphere, 1993, vol. 23, pp. 261–274. DOI: 10.1007/BF01581903
Milbury, C., Schubert, G., Raymond, C. A., Smrekar, S. E. & Langlais, B. The history of Mars' dynamo as revealed by modeling magnetic anomalies near Tyrrhenus Mons and Syrtis Major // Journal of Geophysical Research: Planets, 2012, vol. 117, E10007. DOI: 10.1029/2012JE004099
Mittapalli, G. K. et al. Mapping the Landscape of Potentially Primordial Informational Oligomers: Oligodipeptides Tagged with 2,4-Disubstituted 5-Aminopyrimidines as Recognition Elements // Angewandte Chemie International Edition, 2007, vol. 46, pp. 2478–2484. DOI: 10.1002/anie.200603209
Mix, L., Haig, D. & Cavanaugh, C. Phylogenetic Analyses of the Core Antenna Domain: Investigatingthe Origin of Photosystem I // Journal of Molecular Evolution, 2005, vol. 60, pp. 153–163. DOI: 10.1007/s00239-003-0181-2
Möller, W. & Janssen, G. M. C. Transfer RNAs for primordial amino acids contain remnants of a primitive code at position 3 to 5 // Biochimie, 1990, vol. 72, pp. 361–368. DOI: 10.1016/0300–9084(90)90033-D
